If I controlled the grocery cart growing up, my family would have subsisted on Eggo waffles and boxed mac and cheese. Now that I’m grown, we subsist on Spicy Pizza Mac and Cheese instead.

Spicy Pizza Mac and Cheese. Your entire family will love this baked mac and cheese recipe!

Mac and cheese is deeply entwined with my childhood. Every birthday, I requested my Grammy’s homemade macaroni and cheese (my favorite meal), and on every other night, I begged for the faux-bacon, yellow-box variety (my second favorite meal).

As an adult, I’ve moved beyond the box, but I still find the decadent combination of creamy cheese and buttery pasta deeply, uniquely comforting in a way that only favorite childhood dishes can emulate.

An instant family favorite: Pizza Mac and Cheese. The homemade baked mac and cheese with mozzarella and any of your favorite toppings!

Spicy Pizza Mac and Cheese. A gourmet mac and cheese recipe your entire family will love!

Easy Pizza Mac and Cheese

Mac and cheese satisfies the part of me that still wants to spend my days flying kites, riding bikes, and rearranging my Beanie Babies—which is to say that it satisfies many parts of me. At the same time, however, my adult self recognizes that one cannot live from the box alone and that most mac and cheese recipes are best kept to a small side dish or for a special indulgence.

Spicy pizza mac and cheese is where my Velveeta-loving inner-kid and healthy-lifestyle loving adult intersect. It has all the creamy comfort that prompted me to love the box in the first place but is significantly lightened up and filled with bright flavors, lean protein, and veggies.

I love using macaroni and cheese as a vehicle for other favorite flavors (reference: Skinny Greek Mac and Cheese with Crispy Pita Chip Topping), and today’s recipe is inspired by another lifetime favorite food, pizza. While that might sound a bit odd, the two truly jive.

Classic pizza cheeses (Mozzarella, Fontina) are creamy and melty—perfect for mac and cheese—and favorite pizza toppings such as pepperoni and bell peppers work equally well stirred in with pasta as they do sprinkled over a crust.

Spicy Pizza Mac and Cheese. Gooey homemade macaroni and cheese with your favorite pizza toppings mixed in

Why I Love this Recipe

  • It’s an all-in-one dish. In addition to being endlessly customizable (use any pizza toppings your family loves) and lightened up (I adapted my favorite lighter cheese sauce from this Healthy Ham and Cheese Casserole with Apples and Sage to the pizza theme) another beautiful aspect of pizza mac and cheese is that it is truly an all-in-one dish. By adding lots of veggies and lean protein, we have a single pasta bake that hits all of the food groups. Translation: less cooking and less dishes.
  • Delicious Leftover. Spicy pizza mac and cheese is also freezer friendly and tastes fabulous leftover too, which my practical adult-side adores.

More Scrumptious Mac and Cheese Recipes

Spicy Pizza Mac and Cheese. Homemade baked mac and cheese with your favorite pizza toppings like mozzarella and pepperoni

All my bike-riding, Beanie-Baby playing, and responsibility-immune inner-kid knows is that Spicy Pizza Mac and Cheese is delicious. I think I need to listen to her more often.

My inner kid just did a cartwheel. This calls for seconds on spicy pizza mac and cheese.

Spicy Pizza Mac and Cheese. Your entire family will love this baked mac and cheese recipe!
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5 from 1 vote

Spicy Pizza Mac and Cheese

Spicy Pizza Mac and Cheese made with mozzarella and your family's favorite pizza toppings like pepperoni, peppers, and olives. This lightened up mac and cheese recipe is freezer-friendly and makes great leftovers too.
Prep Time: 15 mins
Total Time: 1 hr
Servings: 1 9x13-inch pan (serves 8)


For the Pasta:

  • 12 ounces whole wheat pasta noodles, - such as rigatoni
  • 1 tablespoon extra virgin olive oil
  • 1 large yellow onion - diced
  • 1 green bell pepper - diced
  • 1 red bell pepper - diced
  • 1 can diced tomatoes - (14 ounces) drained
  • 3 ounces turkey pepperoni slices - (about 50 slices)
  • 1/4 cup pitted black olives - chopped

For the Sauce:

  • 3 tablespoons unsalted butter
  • 3 teaspoons minced garlic
  • 1/4 cup all-purpose flour
  • 2 1/2 cups non-fat milk
  • 1/4 cup half and half
  • 1 teaspoon crushed red pepper flakes
  • 3/4 teaspoon salt
  • 1 teaspoon dried oregano
  • 1/2 cup plain Greek yogurt
  • 1/2 cup freshly grated Wisconsin Mozzarella cheese
  • 1/2 cup freshly grated Wisconsin Fontina cheese
  • 1/3 cup freshly grated Wisconsin Parmesan cheese


  • Bring large pot of salted water to boil. Add pasta to water and cook until al dente, according to package directions. Drain and set aside.
  • Preheat oven to 350°F and lightly butter 9x13-inch baking dish.
  • In Dutch oven or large, deep sauté pan, heat olive oil over medium high. Sauté onion, red bell pepper and green bell pepper 2 minutes; add drained tomatoes and continue to cook until onion and peppers are crisp tender and tomato cooking liquid has thickened and mostly evaporated, about 5 minutes. With slotted spoon, remove vegetables from pan and set aside. Carefully wipe pan with paper towel.
  • In same pan, melt butter over medium heat. Sprinkle in garlic and flour and cook, whisking often, until flour is golden brown, about 2 minutes. Gradually pour in milk, whisking constantly, then half and half. Cook until sauce simmers and thickens, about 7 minutes. Remove from heat and stir in red pepper flakes, salt and oregano. Stir in Greek yogurt, mozzarella and fontina. Add drained pasta and sautéed vegetables. Stir to coat.
  • Roughly chop 2/3 of pepperoni. Stir into pasta mixture, reserving remaining pepperoni. Spoon pasta into prepared baking dish, then scatter olives and remaining pepperoni over top. Sprinkle with parmesan cheese and bake until hot and bubbly, about 20 minutes. Let rest a few minutes before serving.


Leftover spicy pizza mac and cheese will keep in the refrigerator for up to five days or can be frozen, well-wrapped for up to two months.
Course: Main Course
Cuisine: American
All text and images ©Erin Clarke / Well Plated
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