Have you ever reached into a container of leftover muffins, eager for the fluffy bites of breakfast joy that await, only to discover that the outside of the muffins have become unpleasantly soggy? It’s a sad moment that, while it cannot be reversed, can be avoided with one simple trick. Here’s How to Store Muffins to prolong their shelf life and keep them fresh.
Before we delve in, let’s first address the issue at hand: Why do leftover muffins become soggy?
It is an odd phenomenon. Intuitively, you would think that, as muffins stale, the outsides would become dry. In reality, this just isn’t how muffin science (a delicious field I aspire to master) operates.
As muffins age, their moisture migrates to the surface. That moisture will try to evaporate and, if the muffins are wrapped in plastic or stored in an empty airtight bag or container, that moisture sinks right back onto the muffins’ surface. Unfortunately, there is no way to prevent this (aside from loading the muffins with preservatives), but we can delay the inevitable with a handy little tool I’m betting you have lurking in your kitchen right now.
Paper towels.
Let’s do this.
The Best Way to Store Muffins
STEP ONE: Let the muffins cool completely on a wire rack.
Storing the muffins when they are even a little bit warm will result in even more condensation, as the muffins will still be letting off heat. Let them cool for no more than five-to-10 minutes in the pan, then transfer them to a wire rack to finish cooling completely.
STEP TWO: Line an airtight storage container with paper towels.
The paper towels will act like a “sponge,” absorbing the moisture the muffins emit as they age. Instead of sinking back into the muffin’s surface and making them soggy, the moisture will be absorbed by the paper towels. I like to use one large paper towel, folded in half to fit the container.
Alternatively, you can use a large ziptop bag, turned on its side so that it lays flat—just be sure you store the muffins in a single layer only (do not stack).
STEP THREE: Place muffins in the container, on top of the paper towels.
Or on the bottom of the ziptop bag, still atop the paper towels.
STEP FOUR: Place an additional paper towel layer on top of the muffins.
This is essential. You want to be sure to absorb moisture from all sides. Again, I use a large paper towel, folded in half.
STEP FIVE: Cover and store AT ROOM TEMPERATURE.
Refrigerating the muffins will alter their flavor and texture. Room temperature is the way to go from maximum freshness.
STEP SIX: Enjoy!
The muffins will last two-to-four days stored this way (without this method, you’ll notice the “soggy” factor taking hold in fewer than 24 hours). If the paper towels become very damp, I recommend replacing them on Day 2 or Day 3.
For Storage Longer Than Four Days
- To Freeze. I recommend freezing muffins that you’d like to keep beyond four days. Individually wrap them in plastic, then place them in a ziptop bag and freeze for up to 2 months.
- To Reheat. Let thaw at room temperature or rewarm gently in the microwave.
My Favorite Muffin Recipes
I have DOZENS of Healthy Muffin Recipes for you to choose from, but here are a few ideas:
- Chocolate Muffins
- Raspberry Muffins
- Healthy Banana Muffins
- Healthy Maple Oatmeal Muffins <– the one’s photographed in this post.
You have such great ideas! Thanks, and I’m not a student husbands wife or anything, great tips great recipes, and as for ” moist”, there really isn’t a suitible synonym for it, I’m from Florida, how about “humid” or I love “irriguous” or saturated,
Humid? Lol. That is just hilarious. You are right–the “m” word is pretty much the only one that does the job. So glad you found this tip helpful Diana! Thanks for your comment and happy that you found my blog. Have a great day!
Hi – I have found that keeping muffins in a perforated veggie bag on the counter works great for several days. I will keep about 6 in the veggie bag and freeze the other 6. I don’t even nuke the frozen ones – they only take a few minutes to thaw all on their own….
Great tip! Thank you so much for sharing that Deb.
Instead of wrapping in plastic in the freezer can you wrap in aluminum foil and get the same results?
Hi Shira! Yes, you can wrap them individually with aluminum foil for freezer storage if you prefer.
Such a helpful post, thank you so much Erin!! I have a hard time letting baked goods cool completely because I have zero self control…;)
Same here Marina! I find I just keep picking “one more bite” while they cool. Less muffins to store that way ;-)
Smart idea! I’m trying this!
Thanks Milisa! I hope it does the trick for you.
FANTASTIC tip, Erin! It’s a total bummer when you get SO excited about waking up to one of the muffins you baked the morning before, only to find that they are a soggy mess. But problem solved! Hooray!
I totally agree Leah! Thanks so much :)
Thanks for the tip, now I’ll make those banana nut muffins again❤️
One of our favorites too! Thanks Laura.
hey girl thanks for the tips!
Happy to help Shawnna!
Mine ALWAYS go stale hella fast so this helps. Great pics btw! =]
Thank you so much Danielle!
Wait…there are supposed to be leftover muffins? Oops!
LOL! I like how you think :)
We just put them all in a large tupperware and freeze them after they’ve cooled, without pre wrapping them or anything. about 40 seconds in the microwave and they are warm and fluffy again. I think it’s somewhat more ecological than individually wrapping – at least we’ve never had any problems with it.
That’s good to know, thank you Ana!
Ana, I love your ecological suggestion! I usually freeze mine (after they are *completely* cooled) by the dozen in a container or large ziplock bag (which I reuse!) – muffins thaw perfectly through the day in small single-serve containers that I pop in my lunch bag. :)
Thanks Ana! Love the idea of popping them into containers on your way to work. Great tip!
Thanks for the tip! I’ve been plagued for years by the dreaded second day soggy muffin! I will definitely try this!
I’m so happy it was helpful Linda!
Thank you Erin, I knew there must be a way to do that …..good to know……you are so smart….why didn’t I think of that ? :)
I figured a way to keep cheese longer, but hadn’t figured out the muffins …..mine always gets a little gooey on top……but I always keep them in fridge too…. guess it’s best to just freeze them eh , and just take them out as you want one ?
I definitely find that refrigerating alters their texture. Since muffins are so quick to thaw, when in doubt, I say freeze!
This is so fantastic, thanks so much for sharing. I always end up having to throughout my muffins — but not any more! :)
I’m so glad it was helpful Nancy!
Love this post! Sometimes I forget to do this genius little trick and it’s the pits when the muffins are blech. I need to print this post and hang it on my refrigerator. :)
I need a wire rack – I can’t believe I’ve lived for so long without one in my kitchen. Thanks for another reason to buy one!
Such a great useful tip!!!!!!!!!!! Thanks, Erin!
I’m so glad it’s helpful Hannah!
Thank you soooooooooo much for the awesome trick. I love to cook and bake. I always make too much, our kids are all grown and have started their lives, but I still make too much for my husband and I. This will cut down on wasting things that I love to cook, bake,and of course EAT! Thanks again sweetie!
Jody, I am so happy to hear that this post is helpful for you! I also hate wasting things, and with there only being two of us, I’m constantly looking for ways to prolong shelf life. I hope it’s equally helpful for you too!
Jody, I am so happy to hear that this post is helpful for you! I also hate wasting things, and with there only being two of us, I’m constantly looking for ways to prolong shelf life. I hope you and your hubby enjoy many a fresh muffin :)
Thanks for this suggestion. Just wondering – is there any difference if the muffins are baked in paper cups? I typically use these as I normally are baking muffins to take somewhere else (couldn’t keep them in my house and eat them all!) Thank you!
Hi Susan! I don’t usually use paper cups, so I haven’t specifically compared the two, but I think that the process would be the same. I hope that it is helpful!
How about including a oxygen absorber in the container? Will that help? I m a newly started bakery shop.
Hi Rose, I’m not familiar with oxygen absorbers, so afraid this is out of my realm of expertise. It sounds like an interesting idea though!
what about storage for muffins made with yogurt? I recently tried out a new banana yogurt muffin recipe that I love but I have no idea best storage for it! is it necessary to keep them in the fridge?
Hi Angela, I store all types of muffins this way, including ones made with yogurt!
This advice is great and works for storing almost anything – a paper towel or a clean dish towel regulates the moisture in the box.
This way of storing, in an airtight container with a towel, works for yeast bread, cakes and cookies (though you need to not mix these – bread, cakes and and cookies need different moisture levels and will make each other stale if kept together).
You can even use this to prolong the life of fruit and veg in the fridge – take the produce out of its packaging and put it in a salad box lined with paper towels or clean dish towels, and it will stop condensation building up and causing rot. I find they will last about twice as long that way compared to being kept in their packaging in a bare box or shelf.
Thanks so much for the tips! I love storing produce this way too.
If muffins have a consumable period of more than 5 days (indicated in the packaging), is it okay to not store it in a fridge within the period?
May, these directions apply to homemade vs. packaged muffins (packaged muffins usually have preservatives or other added ingredients so that can stay fresh for longer). For packaged muffins, I’d follow whatever the packaging suggests.
These came out perfect with a few minor substtutions goat milk yogurt, didnt have enough honey, so used part monk fruit.. used paper cubs that I sprayed lightly, but still hard to get out to much sticking to sides.. vety delicious , thank you so much for this recipe
I’m so glad you enjoyed them Angie!
Hi. Good tips. I’ve used paper towels on top of baked goods when they are still warm and I need to take them to an event. Had not thought of placing the paper under though. Will definitely try. I have a question about muffins or bread with fresh fruit such as blueberries. Can you store them on the counter also?
Hi Cyndi! I do store them on the counter, but you can always freeze if you prefer.
We always have fresh bread and muffins at our house- and this Christmas invested in a bread box. Our muffins last perfectly in it without the need for paper towels etc. Just another idea for anyone interested :)
Thanks for sharing this tip, Rachael!
Thank you for the tip!
I’m glad you found this helpful, Tina!
Hey! Can i store blueberry muffins this way too?
Hi Mehwish! Are you referring to my Healthy Blueberry Muffins recipe? If so, yes, this method should work well!
It was my first time making zucchini muffins. Love this recipe! So delicious! I subbed maple syrup and added some flax. Definitely my go to zucchini muffin recipe. Thanks Erin!
So glad you enjoyed them, Jen! Thank you!
Thank you so much for the advice on storing muffins. They always go soggy on me so, I’m going to try your method. I need them for the weekend. I’ll freeze half and store the others. Just signed up to receive your recipes as well!
Great! Thank you Carol!