You are going to high five and hug yourself every rushed morning and mid-afternoon hanger-o’clock for stocking your freezer with these healthy breakfast Egg Muffins!

Breakfast egg muffin cups in a muffin pan with veggies

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You can pop these wholesome muffins into the microwave and reheat them whenever you need a fast, filling breakfast or snack.

  • Breakfast egg muffins are baked egg cups (or mini frittatas, if you prefer a slightly fancier name; check out this Potato Frittata for full-sized) that are loaded with any variety of fresh vegetable, meat, and/or cheesy additions you please.
  • You can enjoy them on their own or make them part of a larger breakfast spread. (Try them alongside these Sweet Potato Hash Browns or savory Potato Pancakes.)
  • Egg muffins are a popular, healthy kid-friendly snack or breakfast for babies and toddlers. Their hand-held size makes veggies approachable.

I’ve made several versions of this egg muffin recipe over time.

Today’s combination for egg muffins with spinach, feta, and a colorful array of veggies is my all-around favorite.

Spinach egg muffins on a plate for kids and adults

5 Star Review

“Delicious and versatile! It’s my new go to sneak some chopped up veggies in with breakfast for my children! The spices weren’t too overbearing but made it super tasty. Coming back to this again and again!”

— Anna —

How to Make Healthy Egg Muffins

A great egg muffin is all about finding the right ratios.

  • Egg-to-Vegetable Ratio: The goal here is to ensure that each of the breakfast egg muffin cups packs a feel-good serving of vegetables without a) falling apart or b) tasting like a mini salad. I consider myself a vegetable enthusiast, but even I have my limitations before 10 a.m. This Healthy Breakfast Casserole has it down too.
  • Whole-Egg to Egg-White Ratio: After a few attempts—all of which were eaten in the name of “research,” but some of which were more delicious than others—I’ve determined the ideal whole-egg to egg-white ratio for a batch of egg muffins is 6 whole eggs plus 4 egg whites.

High In Protein, But Not Spongy

  • Adding a few additional egg whites makes the muffins high in protein and low carb, without losing their filling, creamy texture.
  • I would not recommend all egg whites, as this will cause the muffins to fall apart and be spongy. Use them to make an Egg White Frittata instead.
A carton of eggs, chopped vegetables, and spices for making breakfast

The Ingredients

  • Eggs + Egg Whites. The base for our easy egg muffins. As I mentioned above, these muffins use the perfect amount of each.
  • Vegetables. Because I want this recipe to be filling and healthy, I always include a good amount of fresh vegetables like spinach, green and red peppers, and cherry tomatoes. You’ll feel great starting your day with a serving of veggies, and if you want to bring them to the office for lunch, the vegetables make them a more complete meal.
  • Herbs and Spices. Because egg-white-heavy recipes can be—there really is no polite way to say this—SO BORING, we need to jazz these up with plenty of herbs and spices. My pantry staples are dried basil, dried oregano, salt, and pepper. The combo gives the muffins an Italian-inspired flair and complements the vegetables and feta.
  • Cheese. An optional addition. I used feta, but you can use any other cheese you enjoy (a cheddar cheese version I made in my experimental attempts was delightful).
  • Toppings. The options are endless! Avocado, salsa, hot sauce, and freshly chopped parsley are all tasty ideas if you’re sitting down and have access to your fridge. In a rush? Just warm the up and enjoy them as they are.
A muffin pan filled with chopped vegetables

The Directions

egg muffin ingredients in muffin tin
  1. GENEROUSLY coat a muffin tin with nonstick spray and add mix-ins.
whisking eggs for healthy egg muffins
  1. Whisk together the eggs, egg whites, herbs, and spices.
muffin tin with breakfast egg muffins ready to bake
  1. Fill each cup, then crumble feta over the top.
  2. Bake egg muffins at 350 degrees for 24 to 28 minutes, until set. Let cool, then use a butter knife to loosen the outside of the muffins. Serve hot or store for later. ENJOY!

Tips to Prevent Sticking

  • Nonstick Spray. I cannot stress enough how important it is to generously coat your muffin pan with nonstick spray. These egg muffins love to stick to the pan, so you have to put a thick layer of the spray between the eggs and the muffin pan itself.

Substitution Tip

If you don’t have nonstick spray, brushing your muffin cups with olive oil or melted butter should also do the trick.

  • Silicone Pan. Try using a silicone muffin pan and nonstick spray for double the nonstick power.
  • Muffin Liners. I’ve heard from multiple readers that cupcake liners and parchment paper baking cups were also successful.

Recipe Adaptations + Dietary Swaps

  • Cheesy Egg Muffins. Making these muffins for veggie skeptics but still want a serving of healthy protein? Skip the veggies altogether, and simply use your favorite mix of cheeses, like Parmesan cheese or goat cheese.
  • Spicy Egg Muffins. If you like your eggs on the spicy side, you can also add a few dashes of hot sauce or pinch of cayenne.
  • Zippy Egg Muffins. Try adding a few teaspoons of Dijon mustard.
  • Egg Muffins with Meat. Tasty but optional. I found them plenty satisfying with veggies alone, but if you’d like to add meat, feel free to make this easy breakfast recipe with bacon (I highly recommend this method of Baked Bacon in the Oven for the best results and easiest cleanup; you can also make Air Fryer Bacon) or fold in diced cooked ham or cooked, crumbled sausage.
  • To Make Keto. No changes needed. These are keto egg muffins as written.
  • To Make Dairy-Free, Whole30, and Paleo. Omit the cheese. (If you’re looking for more Whole30 breakfast recipes, try this Whole30 Breakfast Casserole.)
  • Egg Muffins are gluten-free!

Choose-Your-Own-Egg-Cup Adventure

  • No matter whether you choose to make healthy breakfast egg muffins with spinach or select different mix-ins, these muffins are an ideal canvas for customizing your own flavor adventure.
  • The customization makes egg muffins great for kids and toddlers, who will have fun filling the muffin tins with their favorite mix-ins.

Storage Tips

  • To Store. Let the muffins cool completely, then place them in an airtight container in the refrigerator for up to 3 days. You can store all of the muffins together in a single larger container or portion them into individual containers to take with you on the go. Plastic wrap and even plastic baggies work well for portability too.
  • To Reheat. Unwrap the muffins if needed, and place on a microwave-safe plate. Reheat gently in the microwave on medium power until hot and warmed through to the center, about 30 seconds (from thawed) or 1 to 2 minutes (from frozen).
  • To Freeze. Let the muffins cool completely, then individually wrap them in plastic wrap. Place them in a ziptop bag and freeze for up to 3 months. Let thaw overnight in the refrigerator or reheat directly from frozen.

Meal Prep Tip

Egg muffins are perfect for breakfast meal prep! You can multiply the recipe and freeze a multitude of muffins for future breakfasts on demand.

What to Serve with Egg Muffins

Recommended Tools to Make Healthy Egg Muffins

  • Nonstick Spray. How do you keep egg muffins from sticking? This is the answer. You MUST coat the pans with nonstick cooking spray, or your eggs will stick.
  • Muffin Pan. I also love this one, which comes with a handy lid.
  • Silicone Muffin Pan. My sister and several readers reported using this to bake the egg muffins (also with nonstick spray) with roaring success.

All-Star Muffin Pan

This 12-cup cupcake and muffin pan features a fluted surface design that facilitates air circulation and also maximizes pan strength, which helps to resist warping. USA Pan bakeware is durable.

Healthy Breakfast Egg Muffins. Easy, low carb, and freezer friendly, these healthy egg muffin cups are the perfect makeahead breakfast. Like mini quiches without the crusts! Add spinach, ham, or any favorite veggie. Delicious with or without cheese, so these can be Paleo, Whole 30, and dairy free too!

Did you make this recipe?

Let me know what you thought!

Leave a rating below in the comments and let me know how you liked the recipe.

A plate with eggs, veggies, and cheese for a healthy breakfast

Frequently Asked Questions

Can You Reheat Breakfast Egg Muffins?

Yes, you can reheat egg muffins, and that’s part of their appeal. The exact cook time you need to reheat the muffins will vary based on your microwave’s power. Consider the first one a bit of an experiment. From there, you’ll forever know how long you need.

Do Egg Muffins Need to Be Refrigerated?

Yes, egg muffins should be refrigerated to keep from spoiling.

Why Are My Egg Muffins Spongy?

Be sure to use the correct whole-egg-to-egg-white ratio as prescribed in this recipe, do not overmix the eggs, and bake egg muffins at 350 degree F to prevent them from being spongy.

Why Are My Egg Muffins Watery?

You can take the additional step of sautéing the vegetables in a skillet over medium heat before baking in the egg cups to remove any excess moisture from the veggies. If you experience wateriness when reheating leftover egg muffins, try wrapping them in a barely moistened paper towel before reheating in the microwave.

Egg Muffins

4.93 from 41 votes
These healthy veggie egg muffins are the perfect breakfast or snack, plus freezer and kid-friendly. Add any of your favorite veggies or try this combo of spinach, feta, tomatoes, and extra egg whites for high protein.

Prep: 15 mins
Cook: 25 mins
Total: 40 mins

Servings: 12 muffins

Ingredients
  

  • 1 cup lightly packed baby spinach chopped
  • 3/4 cup finely diced red bell pepper about 1 small pepper
  • 3/4 cup finely diced green bell pepper about 1 small pepper
  • 3/4 cup quartered cherry tomatoes or grape tomatoes, about 1 cup whole tomatoes
  • 6 large eggs
  • 4 large egg whites
  • 1/4 teaspoon kosher salt
  • 1/4 teaspoon dried basil
  • 1/4 teaspoon dried oregano
  • Pinch ground black pepper or cayenne pepper if you like a little kick!
  • 1/4 cup crumbled feta cheese plus additional to sprinkle on top
  • Optional toppings: avocado salsa, hot sauce, freshly chopped parsley

Instructions
 

  • Place a rack in the center of your oven and preheat to 350 degrees F. Lightly coat a standard 12-cup muffin tin with nonstick spray. Divide the spinach, red bell pepper, green bell pepper, and tomatoes among the cups (they will be about two-thirds of the way full).
  • In a large bowl or large measuring cup with a spout (my favorite because it makes the mixture easy to pour), briskly whisk together the eggs, egg whites, salt, basil, oregano, and pepper until well combined. Carefully fill each muffin cup three-quarters of the way to the top with the egg mixture. Sprinkle the feta evenly over the tops of the cups.
  • Bake for 24 to 28 minutes, until the egg muffins are set. Let cool for a few minutes, and then run a butter knife around the edges of each muffin to loosen it. Remove them from the pan and enjoy immediately, or let cool on a wire rack and refrigerate or freeze for later (see notes for more details).

Notes

  • TO STORE: Let the muffins cool completely, then place them in an airtight container in the refrigerator for up to 3 days. You can store all of the muffins together in a single larger container or portion them into individual containers to take with you on the go. Plastic wrap and even plastic baggies work well for portability too.
  • TO REHEAT: Unwrap the muffins if needed, and place on a microwave-safe plate. Reheat gently in the microwave on medium power until hot and warmed through to the center, about 30 seconds (from thawed) or 1 to 2 minutes (from frozen).
  • TO FREEZE: Let the muffins cool completely, then individually wrap them in plastic wrap. Place them in a ziptop bag and freeze for up to 3 months. Let thaw overnight in the refrigerator or reheat directly from frozen.

Nutrition

Serving: 1muffinCalories: 70kcalCarbohydrates: 3gProtein: 8gFat: 3gSaturated Fat: 1gCholesterol: 96mgFiber: 1gSugar: 2g

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Erin Clarke

Hi, I'm Erin Clarke, and I'm fearlessly dedicated to making healthy food that's affordable, easy-to-make, and best of all DELISH. I'm the author and recipe developer here at wellplated.com and of The Well Plated Cookbook. I adore both sweets and veggies, and I am on a mission to save you time and dishes. WELCOME!

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  1. I’m so excited to try this recipe! I don’t have a microwave, so if I were to meal prep and freeze the muffins, could I use the oven to reheat them?

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